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almost2years
Transcriptome analysis of primary adult B-cell lineage acute lymphoblastic leukemia identifies pathogenic variants and gene fusions, and predicts subtypes for in depth molecular diagnosis. (PubMed, Eur J Haematol)
We demonstrate that RNA-seq is an effective tool for precision medicine in B-ALL by providing comprehensive molecular profiling of leukemia cells, identifying subtype and oncogenic lesions, and stratifying patients for appropriate therapy.
Preclinical • Journal
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KRAS (KRAS proto-oncogene GTPase) • NRAS (Neuroblastoma RAS viral oncogene homolog) • CRLF2 (Cytokine Receptor Like Factor 2) • PDE4DIP (Phosphodiesterase 4D Interacting Protein) • PDE4D (Phosphodiesterase 4D) • DUX4 (Double Homeobox 4)
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KRAS mutation • KRAS G12D • KRAS G13D • KRAS G12 • KRAS G13 • NRAS G12D • NRAS G12 • NRAS G13 • NRAS G13D
2years
Convergent MAPK pathway alterations mediate acquired resistance to FGFR inhibitors in FGFR2 fusion-positive cholangiocarcinoma. (PubMed, J Hepatol)
These findings suggest convergent genomic evolution in the MAPK pathway may be a potential mechanism of acquired resistance to FGFRi.
Preclinical • Journal
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KRAS (KRAS proto-oncogene GTPase) • BRAF (B-raf proto-oncogene) • NRAS (Neuroblastoma RAS viral oncogene homolog) • FGFR2 (Fibroblast growth factor receptor 2) • BICC1 (BicC Family RNA Binding Protein 1)
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BRAF V600E • KRAS mutation • BRAF V600 • KRAS G12D • FGFR2 mutation • FGFR2 fusion • FGFR fusion • KRAS G12 • NRAS Q61 • FGFR2-BICC1 fusion • KRAS G13 • NRAS G12D • NRAS G12 • NRAS G13 • KRAS Q61 • NRAS G13D • NRAS G12C
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Lytgobi (futibatinib)
2years
Deciphering the Role of RAS Pathway Mutations in the Biology of Human Acute Myeloid Leukemia Using In Vivo Models (ASH 2023)
Some SMO inhibitors have been tested in clinical trial and Glasdegib is FDA approved in combination with low dose cytarabine in elderly patients. Given the success of generating these two point mutations, we are currently generating more RAS pathway mutations, including other KRAS mutations, PNTP11 and NF1 mutations. Conclusion These experiments showed: 1) It is possible to induce 2 oncogenic hits in human primary cells and get leukemia in vivo; 2) the KRAS G13D and NRAS G12D mutations shorten the latency of the disease and 3) increase the LSC frequency in secondary mice; 4) a possible involvement of the Hh pathway on stemness/LSC in RAS mutated cells; 5) our experimental approach is robust and very promising to decipher the RAS pathway in human MLL leukemias.
Preclinical
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KRAS (KRAS proto-oncogene GTPase) • NRAS (Neuroblastoma RAS viral oncogene homolog) • NF1 (Neurofibromin 1) • PTCH1 (Patched 1) • CD34 (CD34 molecule)
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KRAS mutation • NRAS mutation • KRAS G12D • KRAS wild-type • NF1 mutation • KRAS G13D • RAS mutation • RAS wild-type • KRAS G12 • MLL rearrangement • PTCH1 mutation • KRAS G13 • NRAS G12D • NRAS G12 • NRAS G13 • MLL mutation • NRAS G13D • KMT2A expression • KRAS overexpression • KRAS expression
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cytarabine • Daurismo (glasdegib)
2years
RASMULTI(ON) Inhibitor RMC-7977 Targets Oncogenic RAS Mutations and Overcomes RAS/MAPK-Mediated Resistance to FLT3 Inhibitors in AML Models (ASH 2023)
RMC-7977 is a potent, oral small molecule inhibitor of both wild-type and mutant GTP-bound RAS oncoproteins (RASMULTI) and is a preclinical tool compound representative of the clinical candidate RMC-6236, currently in clinical evaluation (NCT05379985)...Gilteritinib and the gilteritinib/venetoclax combination selected for survival of cells harboring NRAS mutations, but RMC-7977 inhibited outgrowth of all cell populations...In vivo studies investigating the tolerability and activity of RMC-7977 and RMC-7977 combinations in RAS mutant/FLT3i-resistant patient-derived xenograft models are ongoing and will be presented. Collectively, our data provide preclinical evidence that combination therapies leveraging RASMULTI(ON) inhibition are effective in suppressing RAS-mutant AML clones, a common mechanism of resistance to currently approved targeted therapies in AML and a current area of high unmet clinical need.
IO biomarker
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KRAS (KRAS proto-oncogene GTPase) • FLT3 (Fms-related tyrosine kinase 3) • NRAS (Neuroblastoma RAS viral oncogene homolog) • KIT (KIT proto-oncogene, receptor tyrosine kinase) • IDH1 (Isocitrate dehydrogenase (NADP(+)) 1) • IDH2 (Isocitrate Dehydrogenase (NADP(+)) 2) • CASP3 (Caspase 3) • CASP7 (Caspase 7)
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KRAS mutation • NRAS mutation • FLT3-ITD mutation • FLT3 mutation • KIT mutation • KRAS G13D • RAS mutation • NRAS Q61K • NRAS Q61 • KIT N822K • NRAS G12 • NRAS G13 • NRAS Q61L • NRAS G13D • NRAS G12C
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Venclexta (venetoclax) • Xospata (gilteritinib) • daraxonrasib (RMC-6236) • RMC-7977
2years
DUSP1 Signaling Pathway Regulates Cytarabine Sensitivity in Acute Myeloid Leukemia. (PubMed, Technol Cancer Res Treat)
We also revealed a correlation between tumor-infiltrating immune cells in RAS mutated AML microenvironment. Our findings suggest that DUSP1 signaling pathways may regulate Ara-C sensitivity in AML.
Journal
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NRAS (Neuroblastoma RAS viral oncogene homolog) • CXCL8 (Chemokine (C-X-C motif) ligand 8) • CREB1 (CAMP Responsive Element Binding Protein 1) • DUSP1 (Dual Specificity Phosphatase 1)
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NRAS mutation • RAS mutation • NRAS G13 • NRAS overexpression • NRAS G13D
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cytarabine
2years
A Study of a Personalized Cancer Vaccine Targeting Shared Neoantigens (clinicaltrials.gov)
P1/2, N=39, Completed, Gritstone bio, Inc. | Active, not recruiting --> Completed | Trial completion date: Dec 2023 --> Mar 2023 | Trial primary completion date: Dec 2023 --> Mar 2023
Trial completion • Trial completion date • Trial primary completion date • Combination therapy • Checkpoint inhibition • IO biomarker • Checkpoint block • Metastases
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KRAS (KRAS proto-oncogene GTPase)
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KRAS G12C • KRAS G12D • KRAS G13D • KRAS G12 • NRAS Q61 • NRAS Q61R • NRAS G12 • NRAS Q61L • NRAS G13D • CTNNB1 S45P • NRAS G12V • KRAS expression • NRAS G12C
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Opdivo (nivolumab) • Yervoy (ipilimumab) • SLATE-KRAS
over2years
Comprehensive genomic profiling of tumor tissue and plasma-circulating tumor DNA in RAS/BRAFV600E wild type metastatic colorectal cancer patients: Initial findings from the CAPRI 2-GOIM trial (ESMO-GI 2023)
P2 | "According to liquid biopsy before second- and third-line therapies, treatment sequences are: FOLFIRI + cetuximab (first-line), FOLFOX + cetuximab (second-line); irinotecan + cetuximab (third-line) in patients with plasma ctDNA RAS/BRAFV600E WT tumors. In patients with RAS/BRAFV600E mutant tumors, second-line is FOLFOX + bevacizumab, while third-line is regorafenib or trifluridine/tipiracil (investigator's choice)... Both tumor tissue- and liquid biopsy-based comprehensive genomic profiling by NGS identify additional molecular alterations, that could be involved in resistance to anti-EGFR monoclonal antibodies, as compared to PCR-based tumor tissue analysis. CAPRI 2-GOIM trial will determine if NGS would allow better selection of RAS/BRAFV600E WT mCRC patients for the most appropriate treatments through three sequential lines of therapies."
Clinical • Circulating tumor DNA
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HER-2 (Human epidermal growth factor receptor 2) • KRAS (KRAS proto-oncogene GTPase) • BRAF (B-raf proto-oncogene) • TP53 (Tumor protein P53) • NRAS (Neuroblastoma RAS viral oncogene homolog) • ARID1A (AT-rich interaction domain 1A) • SMAD4 (SMAD family member 4) • RAS (Rat Sarcoma Virus)
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TP53 mutation • BRAF V600E • KRAS mutation • KRAS G12C • HER-2 amplification • NRAS mutation • BRAF V600 • KRAS G12V • BRAF wild-type • RAS mutation • NRAS Q61K • KRAS G12 • NRAS Q61 • BRAF fusion • KRAS G12S • BRAF K601E • NRAS G12 • NRAS G13 • KRAS A146T • NRAS A146T • NRAS G13D • NRAS A146 • BRAF amplification • NRAS G12V • BRAF K601
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FoundationOne® CDx • FoundationOne® Liquid CDx
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Avastin (bevacizumab) • Erbitux (cetuximab) • 5-fluorouracil • Stivarga (regorafenib) • irinotecan • Lonsurf (trifluridine/tipiracil) • leucovorin calcium
almost3years
A Study of a Personalized Cancer Vaccine Targeting Shared Neoantigens (clinicaltrials.gov)
P1/2, N=39, Active, not recruiting, Gritstone bio, Inc. | Recruiting --> Active, not recruiting | N=144 --> 39
Enrollment closed • Enrollment change • Combination therapy • Checkpoint inhibition • IO biomarker • Checkpoint block • Metastases
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KRAS (KRAS proto-oncogene GTPase)
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KRAS G12C • KRAS G12D • KRAS G13D • KRAS G12 • NRAS Q61 • NRAS Q61R • NRAS G12 • NRAS Q61L • NRAS G13D • CTNNB1 S45P • NRAS G12V • KRAS expression • NRAS G12C
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Opdivo (nivolumab) • Yervoy (ipilimumab) • SLATE-KRAS
almost3years
A Study of a Personalized Cancer Vaccine Targeting Shared Neoantigens (clinicaltrials.gov)
P1/2, N=144, Recruiting, Gritstone bio, Inc. | Trial primary completion date: Dec 2022 --> Dec 2023
Trial primary completion date • Combination therapy • Checkpoint inhibition • IO biomarker • Checkpoint block • Metastases
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KRAS (KRAS proto-oncogene GTPase)
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KRAS G12C • KRAS G12D • KRAS G13D • KRAS G12 • NRAS Q61 • NRAS Q61R • NRAS G12 • NRAS Q61L • NRAS G13D • CTNNB1 S45P • NRAS G12V • KRAS expression • NRAS G12C
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Opdivo (nivolumab) • Yervoy (ipilimumab) • SLATE-KRAS
almost3years
Acute Myeloid Leukemia with CEBPA Mutation: Next-Generation Sequencing-Based Computational Approach For Enhancing the Diagnosis of Patients with Potential Germline CEBPA Mutated Predisposition (USCAP 2023)
Recognizing and referring patients with possible germline mutations for appropriate genetic evaluation and testing provides insight into best patient care strategies along with education and testing opportunities for family members. Leukemia based NGS panels may aid as screening tools for detecting potential pathogenic germline variants.
Clinical • Next-generation sequencing
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FLT3 (Fms-related tyrosine kinase 3) • NRAS (Neuroblastoma RAS viral oncogene homolog) • IDH1 (Isocitrate dehydrogenase (NADP(+)) 1) • IDH2 (Isocitrate Dehydrogenase (NADP(+)) 2) • NPM1 (Nucleophosmin 1) • CDKN2A (Cyclin Dependent Kinase Inhibitor 2A) • DNMT3A (DNA methyltransferase 1) • RUNX1 (RUNX Family Transcription Factor 1) • ASXL1 (ASXL Transcriptional Regulator 1) • PTPN11 (Protein Tyrosine Phosphatase Non-Receptor Type 11) • CDKN2B (Cyclin Dependent Kinase Inhibitor 2B) • KMT2C (Lysine Methyltransferase 2C) • WT1 (WT1 Transcription Factor) • BCOR (BCL6 Corepressor) • CEBPA (CCAAT Enhancer Binding Protein Alpha) • CD36 (thrombospondin receptor) • MSH3 (MutS Homolog 3) • GATA2 (GATA Binding Protein 2) • PHF6 (PHD Finger Protein 6) • BCORL1 (BCL6 Corepressor Like 1)
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NRAS Q61 • CEBPA mutation • NRAS G13 • NRAS Q61L • DNMT3A R882H • IDH1 R132 • NRAS G13D • NRAS G13R • IDH2 R140Q • DNMT3A R882 • NPM1 W288
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FoundationOne® Heme CDx