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12d
Integrative analysis of RNA expression signatures and recurrent genomic alterations before treatment: link to menopausal status, short-term endocrine therapy response and disease-free survival in luminal breast cancer. (PubMed, ESMO Open)
Endocrine resistance in luminal breast cancer is characterized by elevated immune signatures, increased proliferation, and specific genomic alterations. The integration of clinical information, gene expression patterns, and genetic data enhances patient stratification and potentially informs treatment decisions. These findings support the use of integrative analyses to guide personalized endocrine therapy and improve outcomes.
Journal • BRCA Biomarker
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HER-2 (Human epidermal growth factor receptor 2) • ER (Estrogen receptor) • TP53 (Tumor protein P53) • PGR (Progesterone receptor) • HRD (Homologous Recombination Deficiency) • PD-1 (Programmed cell death 1) • IFNG (Interferon, gamma) • BRCA (Breast cancer early onset)
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TP53 mutation • ER positive • HER-2 negative • HRD • HER-2 negative + ER positive
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nCounter® Breast Cancer 360™ Panel
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tamoxifen
3ms
Multiomic Analysis Links Neighborhood Disadvantage to Inflammatory Proteins and Tumorigenic Markers in ER+ Breast Cancer Plasma and Tumor Samples. (PubMed, J Proteome Res)
Patients from deprived areas exhibited higher inflammation and antioxidant depletion even within the same tumor grade (p < 0.05). Neighborhood deprivation correlates with pro-inflammatory, proliferative multiomic profiles that may underlie worsened outcomes.
Journal
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ER (Estrogen receptor)
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ER positive
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nCounter® Breast Cancer 360™ Panel
3ms
Characterization of the tumor immune microenvironment in pregnancy-associated breast cancer through multiplex immunohistochemistry and transcriptome analyses. (PubMed, Breast Cancer Res)
Using multiplex IHC and transcriptome analyses, this study demonstrated that PABC was associated with a higher abundance of immune cells, including increased infiltration of T cells, B cells, and macrophages, in the breast tumor microenvironment. Future research is required to focus on the role of immune cells in pregnancy-associated breast cancer patients.
Retrospective data • Journal
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CD20 (Membrane Spanning 4-Domains A1) • CD8 (cluster of differentiation 8) • CD163 (CD163 Molecule) • CD4 (CD4 Molecule) • CD68 (CD68 Molecule)
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nCounter® Breast Cancer 360™ Panel
4ms
Clinical and molecular landscape of metastatic extramammary Paget's disease. (PubMed, Oncologist)
This study highlights the unique molecular and biological features of metastatic EMPD, emphasizing the need for tailored treatment approaches. This information should be used to guide future clinical strategies for metastatic EMPD.
Journal • PD(L)-1 Biomarker • IO biomarker
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PD-L1 (Programmed death ligand 1) • ER (Estrogen receptor) • PGR (Progesterone receptor) • CD8 (cluster of differentiation 8) • PD-1 (Programmed cell death 1)
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PD-L1 expression • HR positive • HER-2 overexpression • HER-2 overexpression + HR positive
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nCounter® Breast Cancer 360™ Panel
4ms
Gene expression profiling in a retrospective real-world cohort of breast cancer brain metastases and paired primary tumors identifies biological changes with potential therapeutic implications. (PubMed, ESMO Open)
Non-luminal intrinsic subtypes are prevalent in BCBMs and basal-like genomic features are associated with worse survival. Recurrent gene expression modifications with potential therapeutic implications were observed in BCBMs.
Retrospective data • Journal • Real-world evidence
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HER-2 (Human epidermal growth factor receptor 2) • ER (Estrogen receptor) • FGFR4 (Fibroblast growth factor receptor 4)
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HER-2 positive • HR positive • HER-2 negative • HR positive + HER-2 negative • HER-2 negative + HR negative
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Prosigna™ Breast Cancer Prognostic Gene Signature Assay • nCounter® Breast Cancer 360™ Panel
6ms
Exploring the Nottingham classification: assessing gene expression profiles in breast cancer patients and their association with outcomes. (PubMed, Breast Cancer Res Treat)
This study reinforces the prognostic utility of histological grading and reveals a set of cell cycle-related genes whose overexpression is linked to adverse outcomes in breast cancer. These findings suggest potential biomarkers for risk stratification and therapeutic targeting, offering insights for personalized management of patients beyond traditional histological assessments.
Journal • Gene Expression Profile
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TOP2A (DNA topoisomerase 2-alpha) • BIRC5 (Baculoviral IAP repeat containing 5) • FOXM1 (Forkhead Box M1) • MYBL2 (MYB Proto-Oncogene Like 2) • UBE2C (Ubiquitin Conjugating Enzyme E2 C)
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nCounter® Breast Cancer 360™ Panel
8ms
Multiplex Spatial Proteomic Analysis of HER2-Positive Breast Tumors Reveals Unique Molecular and Immunologic Features Associated With Treatment Response. (PubMed, JCO Precis Oncol)
ER-negative, HER2-positive breast cancer has unique molecular and immunologic features that may predict pCR after neoadjuvant HP. Validation of these potential biomarkers and composite biomarker analyses may guide design of future clinical trials.
Journal
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EGFR (Epidermal growth factor receptor) • HER-2 (Human epidermal growth factor receptor 2) • ER (Estrogen receptor)
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HER-2 positive • ER negative
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nCounter® Breast Cancer 360™ Panel
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Herceptin (trastuzumab) • Perjeta (pertuzumab)
10ms
Molecular characterization of pregnancy-associated breast cancer and insights on timing from GEICAM-EMBARCAM study. (PubMed, NPJ Breast Cancer)
Interestingly, differences emerged when comparing patients diagnosed during gestation (PABC-GS) and the postpartum period (PABC-PP), with PABC-PP showing increased expression of immune-related genes, including PD-1, and greater immune cell infiltration (Tregs, macrophages, neutrophils, B-cells). These findings suggest an enhanced proliferative capacity and impaired DNA repair in PABC, and underscore the role of immune infiltration in postpartum cases; providing insights into its aggressive nature and potential targets.
Journal • PD(L)-1 Biomarker • IO biomarker
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PTEN (Phosphatase and tensin homolog) • PD-1 (Programmed cell death 1) • CCNA2 (Cyclin A2) • FOXM1 (Forkhead Box M1) • FAM83D (Family With Sequence Similarity 83 Member D) • CDK3 (Cyclin Dependent Kinase 3)
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nCounter® Breast Cancer 360™ Panel
1year
Intrinsic subtype expression between durable and poor responder during anti-HER2 treatment in triple-positive breast cancer (SABCS 2024)
In this study, we analyzed the intrinsic subtype of HR positive, HER2 positive breast cancer based on prediction analysis of microarray 50 (PAM50) and Breast Cancer 360 panel (nanostring) between durable and poor responder in first-line docetaxel + trastuzumab + pertuzumab (THP) treated patients. Conclusions Other than HER2 pathway, ER pathway and inflammatory signal may influence the tumor response of HR(+), HER2 (+) breast cancer. Further clinical trials should be designed based not only on HER2 status, ER status and other molecular subtypes should be considered to maximize the clinical benefit.
HER-2 (Human epidermal growth factor receptor 2) • ER (Estrogen receptor)
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HER-2 positive • HR positive • HER-2 overexpression • HER-2 amplification + HR-positive • HER-2 overexpression + HR negative • HER-2 overexpression + HR positive • HER-2 positive + HER-2 overexpression • HER-2 positive + HR negative
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Prosigna™ Breast Cancer Prognostic Gene Signature Assay • nCounter® Breast Cancer 360™ Panel
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Herceptin (trastuzumab) • docetaxel • Perjeta (pertuzumab)
1year
Gene expression profiling of brain metastases and matched primary breast tumours with focus on the immune system and tumour microenvironment (SABCS 2024)
We found a downregulation of GE signatures related to the immune system and tumour ME in BM compared with PT. This was validated by the lower levels of TILs, CD4+ and CD8+ T cells in BM. The lower immunogenicity of BM may partly explain the reduced effect by immunotherapy intracranially.
Gene expression profiling • PD(L)-1 Biomarker • BRCA Biomarker • IO biomarker
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PD-L1 (Programmed death ligand 1) • TP53 (Tumor protein P53) • PIK3CA (Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha) • CD8 (cluster of differentiation 8) • PD-1 (Programmed cell death 1) • IFNG (Interferon, gamma) • CD276 (CD276 Molecule) • BRCA (Breast cancer early onset) • TIGIT (T Cell Immunoreceptor With Ig And ITIM Domains 2) • IDO1 (Indoleamine 2,3-dioxygenase 1) • CD4 (CD4 Molecule) • SOX2 • CD68 (CD68 Molecule) • TGFB1 (Transforming Growth Factor Beta 1) • FOXP3 (Forkhead Box P3)
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TP53 mutation • PIK3CA mutation • TP53 wild-type • PIK3CA expression • CD4 expression
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nCounter® Breast Cancer 360™ Panel
1year
First-line (1L) ribociclib (RIB) + endocrine therapy (ET) vs combination chemotherapy (combo CT) in clinically aggressive HR+/HER2- advanced breast cancer (ABC): a subgroup analysis of RIGHT Choice by intrinsic subtype & gene & signature expression. (SABCS 2024)
Methods Pre/perimenopausal pts with no prior systemic therapy for aggressive HR+/HER2− ABC were randomized 1:1 to RIB + letrozole/anastrozole + goserelin or physician's choice of combo CT. Contrary results in the CT arm suggest that these signatures warrant further studies on their potential predictive value. These data are hypothesis generating and should be interpreted with caution due to small sample sizes.
Clinical • Metastases
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HER-2 (Human epidermal growth factor receptor 2) • ER (Estrogen receptor)
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HER-2 negative • ER expression • ER overexpression • ER-L
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nCounter® Breast Cancer 360™ Panel • nCounter® PanCancer IO 360™ Panel
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Kisqali (ribociclib) • letrozole • anastrozole • goserelin acetate
1year
Visceral adiposity is associated with survival and distinct gene expression patterns in HER2-enriched subtype tumors (SABCS 2024)
Excess visceral adiposity was associated with shorter survival and increased expression of stroma and mammary stemness genes in tumors of patients with HER2-enriched breast cancer, suggesting adiposity's contribution to breast cancer progression differs by molecular intrinsic subtype. This translational study provides additional evidence for the importance of excess adiposity as is a major modifiable risk factor for patient survival.
HER-2 (Human epidermal growth factor receptor 2) • DDR2 (Discoidin domain receptor 2) • SALL4 (Spalt Like Transcription Factor 4) • COL6A3 (Collagen Type VI Alpha 3 Chain) • ADAM12 (ADAM Metallopeptidase Domain 12) • HEG1 (Heart Development Protein With EGF Like Domains 1)
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HER-2 expression
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Prosigna™ Breast Cancer Prognostic Gene Signature Assay • nCounter® Breast Cancer 360™ Panel