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4ms
Transcriptomic Profiling of Paired Primary Tumors and CNS Metastases in Breast Cancer Reveals Immune Modulation Signatures. (PubMed, Int J Mol Sci)
This study highlights transcriptional signatures associated with breast cancer CNS metastases, emphasizing the role of immune modulation in metastatic progression. The identified genes have potential as prognostic biomarkers and therapeutic targets, supporting the need for site-specific molecular profiling in metastatic breast cancer management.
Journal
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CXCL9 (Chemokine (C-X-C motif) ligand 9) • IL7R (Interleukin 7 Receptor) • CD79A (CD79a Molecule)
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nCounter® PanCancer IO 360™ Panel
4ms
Molecular comparison reveals distinct transcriptomic differences between uterine carcinosarcoma and papillary serous carcinoma distinguishable by DNA damage. (PubMed, Gynecol Oncol)
We present here a detailed, treatment-oriented molecular comparison between two histologically distinct endometrial cancer subtypes, UPSC and UCS. Assessment of unrepaired DNA damage and, by proxy, DNA repair capacity, gives context to the immune transcriptomic landscape. Our data suggests that the immune exhausted molecular landscape of UPSC may be more amenable to IO than that of UCS, while the DNA repair-robust UCS may be more vulnerable to agents targeting DNA Damage repair such as PARP inhibitors. Further, our data suggests that estimation of DNA repair capacity via RADD may be as treatment informative as molecular sequencing.
Journal • PARP Biomarker • IO biomarker
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nCounter® PanCancer IO 360™ Panel
5ms
Gene-expression signature predicts autoimmune toxicity in metastatic melanoma. (PubMed, J Immunother Cancer)
Whole-blood gene-expression profiling enables early identification of patients at high risk for irAEs during anti-PD-1 therapy. These predictive biomarkers may guide personalized toxicity monitoring in melanoma treatment.
Retrospective data • Journal • PD(L)-1 Biomarker • IO biomarker
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FASLG (Fas ligand) • ICOS (Inducible T Cell Costimulator) • TGFB2 (Transforming Growth Factor Beta 2)
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nCounter® PanCancer IO 360™ Panel
9ms
Journal
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NCAM1 (Neural cell adhesion molecule 1) • SOX10 (SRY-Box 10) • CDC20 (Cell Division Cycle 20) • PLAG1 (PLAG1 Zinc Finger) • MAML2 (Mastermind Like Transcriptional Coactivator 2) • TRPS1 (Transcriptional Repressor GATA Binding 1)
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nCounter® PanCancer IO 360™ Panel
11ms
Intratumoral Injection of Autologous CD1c (BDCA-1)+ MyDC, Avelumab, and Ipilimumab Plus Systemic Nivolumab (clinicaltrials.gov)
P1/2, N=18, Recruiting, Universitair Ziekenhuis Brussel | Phase classification: P1 --> P1/2 | Trial completion date: Dec 2020 --> Dec 2025 | Trial primary completion date: Dec 2020 --> Dec 2025 | Completed --> Recruiting
Enrollment open • Phase classification • Trial completion date • Trial primary completion date
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CD8 (cluster of differentiation 8) • CD4 (CD4 Molecule) • CD1C (CD1c Molecule)
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nCounter® PanCancer IO 360™ Panel
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Opdivo (nivolumab) • Yervoy (ipilimumab) • Bavencio (avelumab)
1year
Intratumoral administration of poly-ICLC enhances the antitumor effects of anti-PD-1. (PubMed, J Hepatobiliary Pancreat Sci)
Combination therapy with poly-ICLC, especially through IT route, and anti-PD-1 provides significantly greater antitumor effects than anti-PD-1 monotherapy in syngeneic mouse models of HCC.
Journal
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CD8 (cluster of differentiation 8) • IFNG (Interferon, gamma)
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nCounter® PanCancer IO 360™ Panel
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Hiltonol (poly-ICLC)
1year
Transcriptomic profiling of primary and secondary lesions identified a potential crosstalk between MARCO+ macrophages and deregulated cancer-cell proliferation in mediating progression and therapy response of advanced clear cell renal cell carcinoma. (EMUC 2024)
Conclusions Overall, these preliminary data reveal a potential crosstalk between deregulated cancer cell proliferation and MARCO+Mφs in mediating disease progression and ICI resistance of ccRCC. Mechanistic experiments will be performed to confirm this assumption and to test whether targeting cancer cell-deregulated proliferation (e.g. by FDA-approved CDK4/6-TAs) could reshape ccRCC-mediated Mφ polarization and improve ICI efficacy.
IO biomarker • Metastases
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CDK4 (Cyclin-dependent kinase 4)
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nCounter® PanCancer IO 360™ Panel
1year
Impact of Inflammation, Tumor and Product Attributes on Clinical Outcomes in Patients with Relapsed/Refractory Follicular Lymphoma Treated with Axicabtagene Ciloleucel (ASH 2024)
Conclusions : These findings underscore the significance of pre-treatment systemic inflammation (e.g. serum TNFa levels), product T cell phenotype, TMTV, CAR T-cell expansion, tumor IFN signaling and FLIPI as independent factors associated with clinical outcomes in patients with r/r FL treated with axi-cel. These results offer insights into mechanisms of resistance and toxicity, risk stratification, combination therapy and development of next-generation CAR-T therapy for patients with r/r FL.
Clinical data • Clinical • IO biomarker
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CD19 (CD19 Molecule) • IFNG (Interferon, gamma) • LAG3 (Lymphocyte Activating 3) • TNFA (Tumor Necrosis Factor-Alpha) • HAVCR2 (Hepatitis A Virus Cellular Receptor 2) • CCR7 (Chemokine (C-C motif) receptor 7)
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CD19 expression
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nCounter® PanCancer IO 360™ Panel
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Yescarta (axicabtagene ciloleucel)
1year
T/NK Cell-Associated Transcriptomic Profile Informs Response to FLT3 Inhibitors in Acute Myeloid Leukemia (ASH 2024)
We then profiled a wet-lab cohort of 37 FLT3-mut AML patients treated either with Midostaurin plus chemotherapy (M) or Gilteritinib (G) at Bologna Hematology Institute by using the PanCancer IO 360 Panel (NanoString Technologies, San Diego, CA). S.R. & A.C. equally contributed
FLT3 (Fms-related tyrosine kinase 3) • CD8 (cluster of differentiation 8) • CD4 (CD4 Molecule) • GLI2 (GLI Family Zinc Finger 2)
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FLT3 mutation
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nCounter® PanCancer IO 360™ Panel
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Xospata (gilteritinib) • midostaurin
1year
First-line (1L) ribociclib (RIB) + endocrine therapy (ET) vs combination chemotherapy (combo CT) in clinically aggressive HR+/HER2- advanced breast cancer (ABC): a subgroup analysis of RIGHT Choice by intrinsic subtype & gene & signature expression. (SABCS 2024)
Methods Pre/perimenopausal pts with no prior systemic therapy for aggressive HR+/HER2− ABC were randomized 1:1 to RIB + letrozole/anastrozole + goserelin or physician's choice of combo CT. Contrary results in the CT arm suggest that these signatures warrant further studies on their potential predictive value. These data are hypothesis generating and should be interpreted with caution due to small sample sizes.
Clinical • Metastases
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HER-2 (Human epidermal growth factor receptor 2) • ER (Estrogen receptor)
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HER-2 negative • ER expression • ER overexpression • ER-L
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nCounter® Breast Cancer 360™ Panel • nCounter® PanCancer IO 360™ Panel
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Kisqali (ribociclib) • letrozole • anastrozole • goserelin acetate
1year
The A2AR antagonist inupadenant promotes humoral responses in patients (ESMO-IO 2024)
These effects may play a substantial role in delaying progression in end-stage patients. Additional work is ongoing to demonstrate this new mechanism of action across clinical settings and patient populations.
Clinical
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CXCL13 (Chemokine (C-X-C motif) ligand 13) • ADORA2A (Adenosine A2a Receptor)
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CXCL13 expression
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nCounter® PanCancer IO 360™ Panel
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inupadenant (EOS-850)
1year
HIGH-DIMENSIONAL, SINGLE-CELL ANALYSIS AND TRANSCRIPTIONAL PROFILING REVEAL NOVEL CORRELATIVES OF RESPONSE TO PARP INHIBITION PLUS PD-1 BLOCKADE IN TRIPLE-NEGATIVE BREAST CANCER (SITC 2024)
P1/2 | "Background TOPACIO was a phase I/II study evaluating the PARP inhibitor (PARPi) niraparib in combination with the anti-PD-1 antibody pembrolizumab in patients with locally advanced or metastatic triple-negative breast cancer (TNBC, n=55), irrespective of BRCA mutation status. The study protocol and/or other relevant documents received central approval by the Dana-Farber institutional review board and/or relevant competent authorities at each site. All patients supplied written informed consent for their participation in the study."
PD-L1 (Programmed death ligand 1) • CD20 (Membrane Spanning 4-Domains A1) • CD8 (cluster of differentiation 8) • BRCA (Breast cancer early onset) • CD163 (CD163 Molecule) • PTPRC (Protein Tyrosine Phosphatase Receptor Type C) • CD68 (CD68 Molecule)
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nCounter® Breast Cancer 360™ Panel • nCounter® PanCancer IO 360™ Panel
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Keytruda (pembrolizumab) • Zejula (niraparib)